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[Behe] claims that random tinkering can never be the source of innovative or even improved biomolecular functioning unless every single step of the way brings clear fitness gains.However, Behe never makes such a claim. Instead, he argues that the chance of an innovation occurring decreases quickly with the number of required specific alterations. Lents also falsely claims the following:
Behe holds modern evolutionary theory to an impossible standard, declaring it "insufficient" if we cannot pinpoint every point mutation, every intermediate genetic step, in what order, and in which ancient organisms.To the contrary, Behe holds evolutionary theory to an entirely reasonable standard. The theory assumes that sufficient numbers of mutations capable of driving large-scale transformations have occurred in countless species to allow for the observed diversity of life. Therefore, at least some such "macromutations" should have been identified to justify this claim. Behe demonstrates beyond reasonable doubt that they have not.




Rapid, long-distance signaling in plants: A plant injured on one leaf by a nibbling insect can alert its other leaves to begin anticipatory defense responses. Working in the model plant Arabidopsis, Toyota et al. show that this systemic signal begins with the release of glutamate, which is perceived by glutamate receptor-like ion channels (see the Perspective by Muday and Brown-Harding). The ion channels then set off a cascade of changes in calcium ion concentration that propagate through the phloem vasculature and through intercellular channels called plasmodesmata. This glutamate-based long-distance signaling is rapid: Within minutes, an undamaged leaf can respond to the fate of a distant leaf.
Abstract
Animals require rapid, long-range molecular signaling networks to integrate sensing and response throughout their bodies. The amino acid glutamate acts as an excitatory neurotransmitter in the vertebrate central nervous system, facilitating long-range information exchange via activation of glutamate receptor channels. Similarly, plants sense local signals, such as herbivore attack, and transmit this information throughout the plant body to rapidly activate defense responses in undamaged parts. Here we show that glutamate is a wound signal in plants. Ion channels of the GLUTAMATE RECEPTOR-LIKE family act as sensors that convert this signal into an increase in intracellular calcium ion concentration that propagates to distant organs, where defense responses are then induced. --Masatsugu Toyota, Dirk Spencer, Satoe Sawai-Toyota, Wang Jiaqi, Tong Zhang, Abraham J. Koo, Gregg A. Howe ... , "Glutamate triggers long-distance, calcium-based plant defense signaling" at Science (paywall)

There has been a spate of interest in the blogosphere recently in the matter of protein evolution, and in particular the proposition that new protein function can evolve. The original version of this essay followed a review of this subject by Long et al. Briefly, the various mechanisms discussed in the review include exon shuffling, gene duplication, retroposition, recruitment of mobile element sequences, lateral gene transfer, gene fusion, and de novo origination. Of all of these, the mechanism that received the least attention was the last - the de novo appearance of new protein-coding genes basically "from scratch". A few examples are mentioned (such as antifreeze proteins, or AFGPs), and long-time followers of ev/cre discussions will recognize the players. However, what I would argue is the most impressive of such examples is not mentioned by Long et al.The Nature Reviews Genetics article Hunt cites, authored by Manyuan Long and his colleagues back in 2003 (Long et al., 2003), has already been discussed here and refuted at length, as well as in Stephen Meyer's 2013 book Darwin's Doubt (Meyer, 2013).
Comment: See also:
- Ionospheric cold plasma discovered at the magnetopause
- Electric Universe: Plasma storms
- Electric Universe: Supersonic plasma jets discovered in Earth's atmosphere
And check out SOTT radio's: Behind the Headlines: The Electric Universe - An interview with Wallace Thornhill