Tree
Here is a new open-access paper, published in Frontiers in Microbiology, that is instructive: "Eukaryogenesis: The Rise of an Emergent Superorganism." Author Philip J. L. Bell begins:
Although it is widely taught that all modern life descended via modification from a last universal common ancestor (LUCA), this dominant paradigm is yet to provide a generally accepted explanation for the chasm in design between prokaryotic and eukaryotic cells. Counter to this dominant paradigm, the viral eukaryogenesis (VE) hypothesis proposes that the eukaryotes originated as an emergent superorganism and thus did not evolve from LUCA via descent with incremental modification. [Emphasis added.]
The "chasm in design"? For a theory (i.e., the universal Tree of Life, rooted in LUCA — universal common descent, or UCD) whose empirical strength is so great that it cannot be doubted, UCD certainly is doubted a lot.

Doubted by biologists, in fact, with no known interest in intelligent design.


Comment:
Study: "Most of Our Evolutionary Trees Could Be Wrong"
Elephant-shrew


From Phys.org:

Study suggests that most of our evolutionary trees could be wrong
New research led by scientists at the Milner Centre for Evolution at the University of Bath suggests that determining evolutionary trees of organisms by comparing anatomy rather than gene sequences is misleading. The study, published in Communications Biology, shows that we often need to overturn centuries of scholarly work that classified living things according to how they look.
In other words: often anatomical similarities are not based on common descent and different lines of evidence (anatomy versus genetics) conflict and thus do not converge on one true tree of life! This refutes one of the favorite talking points of popularizers of Darwinism like Richard Dawkins.
GÜNTER BECHLY
SENIOR FELLOW, CENTER FOR SCIENCE AND CULTURE
Günter Bechly is a German paleo-entomologist who specializes in the fossil history and systematics of insects (esp. dragonflies), the most diverse group of animals. He served as curator for amber and fossil insects in the department of paleontology at the State Museum of Natural History (SMNS) in Stuttgart, Germany. He is also a Senior Fellow with Discovery Institute's Center for Science and Culture. Dr. Bechly earned his Ph.D. in geosciences from Eberhard-Karls-University in Tübingen, Germany.
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