Plagues
S


Question

Source of fungal infection outbreak a mystery, CDC says

Lung Infection
© CDC/ Dr. HardinThis photo of a chest X-ray shows the lungs during a blastomycosis infection, caused by fungi called Blastomyces dermatitidis. Infection usually causes fever, chills, cough and body aches.

In the largest outbreak ever reported in the U.S. of blastomycosis, a fungal infection with flulike symptoms, 55 people in central Wisconsin became sick in 2010.

The fungus that causes blastomycosis is commonly found in soil, but exactly what triggered the spike in cases in Marathon County remains a mystery, according to a new report from the Centers for Disease Control and Prevention and Wisconsin health officials.

Unlike a blastomycosis outbreak in a neighboring Wisconsin county in 2006, in which a pile of waste in a large yard was the likely source, the culprit in this episode remains elusive.

"We didn't find evidence for a single source in the environment that could explain all the cases," said Kaitlin Benedict, an epidemiologist with the CDC's Mycotic Diseases Branch, who was involved in the research.

"We think there were probably multiple 'hot spots' for the fungus in several different neighborhoods."

It's also unclear why infection rates among Asians, particularly those of Hmong descent, were about 12 times higher than non-Asians, the report said.

Some 45 percent of people affected by the outbreak were of Hmong ethnicity. This group is originally from Southeast Asia, but many of those who became sick in the outbreak had been living in Wisconsin for more than a decade, according to the report.

The large number of cases among the Hmong was one of the most surprising things about this outbreak, Benedict said.

"This is the first known report of Asians being disproportionately affected" by the fungal illness, she said, adding that previous studies have shown high blastomycosis rates among African-Americans in other U.S. states.

The report was published online (June 3) in the journal Clinical Infectious Diseases.

Attention

3 squirrels test positive for plague; hikers warned near Palomar Mountain, California

The squirrels were found in campgrounds near Palomar Mountain

Image
Western Gray Squirrel
Editor's Note: County officials issued a correction to their news release on Thursday. The squirrels were found at Cedar Grove Campground and Doane Valley Campground.

Three squirrels with plague have been discovered at two campgrounds near Palomar Mountain.

San Diego County Department of Environmental Health officials urged hikers and campers to take simple precautions Wednesday to make sure they don't come into contact with squirrels or their fleas, which can spread plague, a disease caused by bacteria that can make people very sick and even kill them without quick treatment.

"It's not unusual for us to find plague in our area and there really are simple things people can do to protect themselves," said environmental health director Jack Miller. "The big thing is to avoid contact with squirrels and the fleas they carry. If you're camping, set your tents up away from squirrel burrows. If you're hiking, don't feed squirrels and don't let your kids play with them."

Syringe

Japan's health ministry withdraws recommendation for cervical cancer vaccine

Cervical Vaccine
© The Asahi ShimbunMika Matsufuji, second from right, and other members of the “Zenkoku Shikyukeigan Vaccine Higaisha Renrakukai” hold a news conference to explain possible side effects of a vaccination against cervical cancer in Tokyo on March 25.
The health ministry decided June 14 to withdraw its recommendation for a vaccination to protect girls against cervical cancer after hundreds complained about possible side effects, including long-term pain and numbness.

The Ministry of Health, Labor and Welfare is not suspending the use of the vaccination, but it has instructed local governments not to promote the use of the medicine while studies are conducted on the matter.

"The decision (not to recommend the vaccination) does not mean that the vaccine itself is problematic from the viewpoint of safety," said Mariko Momoi, vice president of the International University of Health and Welfare, who headed a ministry task force looking into the matter.

"By implementing investigations, we want to offer information that can make the people feel more at ease."

It is rare for the ministry to withdraw a recommendation for a vaccine that is used regularly by local governments and is spelled out in a law.

Girls can still receive the vaccination for free, although medical institutions must now inform them beforehand that the ministry does not recommend it.

Chart Bar

Middle East Respiratory Syndrome Coronavirus (MERS-CoV)

MERS-CoV, sometimes called nCoV (novel coronavirus), was first characterized in 2012 by Prof Ali Mohamed Zaki. That first case was a 60-year old male with suspected viral pneumonia. Prof. Zaki ran the usual respiratory viral tests which were negative so he sent a sample to virus hunters at Erasmus Medical Centre in The Netherlands. In the interim Prof Zaki tried a broad-spectrum "pan-coronavirus" RT-PCR method and got a positive result.

Members of the subfamily Coronavirinae that infect humans currently include the respiratory coronaviruses HCoV-OC43 (a betaCoV), HCoV-229E (alphaCoV), HCoV-NL63 (alphaCoV), SARS-CoV (betaCoV), MERS-CoV and HCoV-HKU1 (both betaCoV).

Quick numbers

As of 06th June; FluTrackers, CIDRAP, WHO
  • Total human cases of MERS-CoV: 55a
  • Total deaths attributed to infection with MERS-CoV: 33
  • Current Case Fatality Rate (CFRd): 61%
a Data from FluTrackers, WHO and the European CDC.
b This uses numbers based on publicly available data which may lack detail. This number gives you an idea of our understanding at the moment. To be pedantic and use only the number of discharges as the denominator for the CFR is most useful at the end of an outbreak/epidemic/pandemic, but not so much when data-in-hand is poor during the beginning.

coronavirus timeline
A timeline showing key events starting from the first confirmed human case of infection by the Middle East Respiratory Syndrome Coronavirus in June 2012.

Beaker

Commercial labs patent Novel Coronavirus delaying diagnostic tests

coronavirus
© SPL
It is being reported that commercial labs are applying for patents on the Novel Coronavirus that is currently killing 50% of the people who contract it.

The World Health Organisation (WHO) has urged countries with possible cases of novel coronavirus to share information.

The move comes after Saudi Arabia said the development of diagnostic tests had been delayed by patent rights on the NCoV virus by commercial laboratories.

Twenty-two deaths and 44 cases have been reported worldwide since 2012, the WHO says.

NCoV is from the same family of viruses as the one that caused Severe Acute Respiratory Syndrome (Sars).

An outbreak of Sars in 2003 killed about 770 people. However, NCoV and Sars are distinct from each other, the WHO says.

The virus first emerged in Saudi Arabia, which is where most cases have since arisen.

Arrow Down

More MERS-CoV (coronavirus) deaths reported as clusters are profiled

Another Saudi Arabian has been infected with the Middle East respiratory syndrome coronavirus (MERS-CoV), while six others whose illnesses were previously announced have died, Saudi Arabian authorities and the World Health Organization announced today.

The latest reports raise the unofficial MERS-CoV tally to 50 cases with 30 deaths, for a case-fatality rate of 60%.

Also today, two medical journals published reports on MERS-CoV case clusters in France and Saudi Arabia, which reinforced the view that the virus does not spread very easily from person to person and suggested that its incubation period is as long as 12 days.

In a brief statement, the Saudi Arabian Ministry of Health (MOH) said the latest case is in a "new Saudi citizen," age 61, who has chronic diseases that include kidney failure. The statement said he lives in the Al-Ahsa region but did not say whether his case is related to the hospital-centered case cluster that began there in April.

The MOH also announced the deaths of three patients, aged 60, 58, and 24, whose cases were reported previously and who were hospitalized about a month ago. It said they all had chronic kidney failure and other diseases, but gave no other details.

Megaphone

U.S. says deadly MERS (coronavirus) could affect national security

Mecca pilgrimage
© Associated Press/Hassan AmmarMore than two million Muslims descend on Mecca for the annual Hajj each year. Saudi authorities are advising pilgrims to wear face masks in overcrowded places
As Saudi and U.N. health authorities report new infections from a troubling new respiratory disease, there are concerns that the approaching Hajj - the annual Muslim pilgrimage to Mecca - could increase the risk of spreading the virus as pilgrims return to their home countries.

Meanwhile the U.S. government, in a notice published in the Federal Register Wednesday, declared that the Middle East respiratory syndrome coronavirus (MERS-CoV, or simply MERS) could potentially "affect national security or the health and security of United States citizens living abroad."

Saudi Arabia is currently the undisputed center of the scare.

According to the Centers for Disease Control and Prevention (CDC) the majority of the 55 confirmed MERS cases - 40 infections, 24 deaths - have occurred in the kingdom, while two deaths each have been reported in Britain and Jordan and one death each in France and the United Arab Emirates. (The fatalities in Europe were linked to visits to the Middle East.)

Infections also have been reported in Qatar, Tunisia and Italy.

Ambulance

Coronavirus thread to the entire world, sez WHO - Current Case Fatality Rate: 49%

New SARS-like virus is spreading

Of the 49 known infections with the MERS-CoV virus, 27 have resulted in death, the organization said.

The latest deaths were reported in Saudi Arabia.

The Saudi health ministry said Wednesday that three people died from their infections in the country's eastern region.

WHO tracks new coronavirus to Middle East The virus is "a threat to the entire world," the WHO's general director said Monday.

Megaphone

Novel Coronavirus: a "threat to the entire world", says World Health Organization

Image
The World Health Organisation (WHO) has warned the new Sars-like illness is a 'threat to the entire world'
The new Sars-like respiratory illness which has killed half of the people who have been infected with it is a "threat to the entire world", the World Health Organisation (WHO) has warned.

Experts raised concerns that the disease is "emerging faster than our understanding".

The WHO says that since September last year there have been 44 laboratory confirmed cases across eight countries which have resulted in 22 deaths, including two people in the UK, but reports suggest that the figure could be higher.

Earlier this week, WHO's director general said that the novel virus, which has been called Middle East respiratory syndrome coronavirus - or MERS-CoV, is her "greatest concern".

Addressing the World Health Assembly in Geneva on Monday, Dr Margaret Chan said: "Looking at the overall global situation, my greatest concern right now is the novel coronavirus.

Sherlock

Novel Coronavirus: New SARS-Like Virus

Coronavirus
© Getty Images
On Tuesday, a 65-year-old French man died from a SARS-like infection, called novel coronavirus (nCoV). He was the first man in France to die from the infection, which he contracted after visiting Dubai. Meanwhile, health officials in Saudi Arabia - where the virus was first detected in April 2013 - reported five additional cases of the infection.

Novel coronavirus is among the family of coronaviruses that cause illnesses that range from the common cold to Severe Acute Respiratory Syndrome (SARS). Until last year, the new strain had never before been seen in humans. As of last week, the WHO reported that there have been a total of 49 people infected since September 2012, 27 of whom have died.